Chan et al. (2011) PLoS ONE 6(12):e29138.
Red and green algal origin of diatom membrane transporters: insights into environmental adaptation and cell evolution
Cheong Xin Chan1,2, Adrian Reyes-Prieto1,3 and Debashish Bhattacharya1
1Department of Ecology, Evolution and Natural Resources, and Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901, U.S.A.
2Present address: Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia
3Present address: Department of Biology, Faculty of Science, University of New Brunswick, Fredericton, New Brunswick, Canada
|DATA: Diatom mebrane transporters|
|Diatom membrane transporter proteins (1,014) used in this study||Download (.fasta, 576KB)|
Protein sequence alignments, after GBLOCKS refinement (879) in PHYLIP
(these are used to build the phylogenies)
|Download (.zip, 6.2MB)|
|RAxML phylogenetic trees (879) in NEWICK||Download (.zip, 2.7MB)|
|RESULTS: Sorted RAxML trees|
Sorted phylogenies of diatom MTs according to strongly supported monophyletic
relationships (bootstrap 70%), in their respective clusters (total 399 trees).
Number of terminal taxa per tree (N) >= 30, Number of phyla >= 3, boostrap >= 70%
|Download (.zip, 1.5MB)|
Updated 23 August 2012
©2011-12 Cheong Xin Chan and Debashish Bhattacharya.