Chan et al. (2011) PLoS ONE 6(12):e29138.


Supporting Material
Red and green algal origin of diatom membrane transporters: insights into environmental adaptation and cell evolution

Cheong Xin Chan1,2, Adrian Reyes-Prieto1,3 and Debashish Bhattacharya1
1Department of Ecology, Evolution and Natural Resources, and Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901, U.S.A.
2Present address: Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia
3Present address: Department of Biology, Faculty of Science, University of New Brunswick, Fredericton, New Brunswick, Canada

DATA: Diatom mebrane transporters
Diatom membrane transporter proteins (1,014) used in this study Download (.fasta, 576KB)
Protein sequence alignments, after GBLOCKS refinement (879) in PHYLIP
(these are used to build the phylogenies)
Download (.zip, 6.2MB)
RAxML phylogenetic trees (879) in NEWICK Download (.zip, 2.7MB)
RESULTS: Sorted RAxML trees
Sorted phylogenies of diatom MTs according to strongly supported monophyletic
relationships (bootstrap 70%), in their respective clusters (total 399 trees).
Number of terminal taxa per tree (N) >= 30, Number of phyla >= 3, boostrap >= 70%
Download (.zip, 1.5MB)

Citations:


Updated 23 August 2012

©2011-12 Cheong Xin Chan and Debashish Bhattacharya.