Chan et al. (2012) Plant Physiology, 158(4): 2001-2012.

Supplemental Data

Analysis of Porphyra membrane transporters demonstrates gene transfer among photosynthetic eukaryotes and numerous sodium-coupled transport systems

Cheong Xin Chan1,12, Simone Zšuner2,13, Glen Wheeler3, Arthur R. Grossman4, Simon E. Prochnik5, Nicolas A. Blouin6,14, Yunyun Zhuang7, Christoph Benning2, Mine Berg8, Charles Yarish9, Renée L. Eriksen10, Anita S. Klein10, Senjie Lin7, Ira Levine11, Susan H. Brawley6 and Debashish Bhattacharya1

1Department of Ecology, Evolution and Natural Resources, and Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ 08901; 2Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824; 3Plymouth Marine Laboratory, The Hoe, Plymouth, PL1 3DH, United Kingdom; 4Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305; 5U.S. Department of Energy, Joint Genome Institute, Walnut Creek, CA 94958; 6School of Marine Sciences, University of Maine, Orono, ME 04469; 7Department of Marine Sciences, University of Connecticut, Croton, CT 06340; 8Department of Geophysics, Stanford University, Stanford, CA 94305; 9Department of Ecology and Evolutionary Biology, University of Connecticut, Stamford, CT 06901; 10Department of Biological Sciences, University of New Hampshire, Durham, NH 03824; 11Department of Natural and Applied Science, University of Southern Maine, Lewiston, ME 04240.
12Present address: The University of Queensland, Institute for Molecular Bioscience, ARC Centre of Excellence in Bioinformatics, Brisbane, Australia
13Present address: Institute of Molecular Physiology and Biotechnology of Plants (IMBIO), University of Bonn, 53115 Bonn, Germany
14Present address: Department of Biological Sciences, University of Rhode Island, Kingston, RI 02881

[A] Putative membrane transporter proteins from Porphyra (482) in FASTA Download (.fasta, 262KB)
[B] Corresponding EST contigs encoding the transporters from Porphyra (482) in FASTA Download (.fasta, 741KB)
[C] Protein hits for each of the Porphyra transporter proteins [e-value <= 1e-10] (482) in FASTA
These protein sets were used for multple sequence alignment
Download (.zip, 11MB)
[D] Protein sequence alignments of [C] (460) in PHYLIP
These alignments were used for phylogeny reconstruction
Download (.zip, 4.9MB)
[E] RAxML phylogenetic trees of [D] (460) in NEWICK Download (.zip, 1.7MB)

Citation:
Analysis of Porphyra membrane transporters demonstrates gene transfer among photosynthetic eukaryotes and numerous sodium-coupled transport systems.
Chan CX, Zäuner S, Wheeler GL, Grossman AR, Prochnik SE, Blouin NA, Zhuang Y, Benning C, Berg GM, Yarish C, Eriksen RL, Klein AS, Lin S, Levine I, Brawley SH and Bhattacharya D (2012).
Plant Physiology, 158(4): 2001-2012.
DOI:10.1104/pp.112.193896 | PubMed | PDF



©2010-2012 Porphyra Genome Project Research Coordination Network. Maintained by Cheong Xin Chan.
Updated 14 June, 2012