Welcome

This site hosts the transcriptome data generated from the red seaweed, Porphyra umbilicalis and Porphyra purpurea, as part of the Porphyra Genome Project - NSF Research Coordination Network. Please cite the appropriate papers listed below when using these data.

Downloads Download transcriptome data of P. umbilicalis and P. purpurea, or retrieve sequences from the current dataset using sequence identifiers.
BLAST BLAST your query sequence against the available dataset
Porphyra.org More information about Porphyra and the genome project
Citations

Overall transcriptome of Porphyra:
Porphyra (Bangiophyceae) transcriptomes provide insights into red algal development and metabolism.
Chan CX, Blouin NA, Zhuang Y, Zäuner S, Prochnik SE, Lindquist E, Lin S, Benning C, Lohr M, Yarish C, Gantt E, Grossman AR, Lu S, Müller K, Stiller J, Brawley SH and Bhattacharya D (2012).
Journal of Phycology, 48(6): 1328-1342.
DOI PDF This Site

Membrane transporters, ecophysiology between marine and freshwater red algae:
Analysis of Porphyra membrane transporters demonstrates gene transfer among photosynthetic eukaryotes and numerous sodium-coupled transport systems.
Chan CX, Zäuner S, Wheeler GL, Grossman AR, Prochnik SE, Blouin NA, Zhuang Y, Benning C, Berg GM, Yarish C, Eriksen RL, Klein AS, Lin S, Levine I, Brawley SH and Bhattacharya D (2012).
Plant Physiology, 158(4): 2001-2012.
DOI PubMed PDF Supp Info

Developmental genes/regulators in sporophyte (conchocelis) and gametophyte (blade):
Major developmental regulators and their expression in two closely related species of Porphyra (Rhodophyta).
Stiller JW, Perry J, Rymarquis LA, Accerbi M, Green PJ, Prochnik S, Lindquist E, Chan CX, Yarish C, Lin S, Zhuang Y, Blouin NA and Brawley SH (2012).
Journal of Phycology, 48(4): 883-896.
DOI PDF

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Location Rutgers, The State University of New Jersey
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Access http://dbdata.rutgers.edu/nori
Open access
Correspondence Susan Brawley [more info]
School of Marine Sciences, University of Maine, Bangor ME, USA


Debashish Bhattacharya [more info]
Dept Ecology, Evolution & Natural Resources, Rutgers University, New Brunswick NJ, USA
Webmaster Cheong Xin Chan (CX) [more info]
The University of Queensland, Institute for Molecular Bioscience, and ARC Centre of Excellence in Bioinformatics, Brisbane QLD, Australia
Acknowledgment Susanne Rümmelle for sharing of PHP scripts.